Package index
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epi_data - Simulated beta epidemiological dataset
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binomial_data - Simulated binomial epidemiological dataset
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gamma_data - Simulated gamma epidemiological dataset
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gaussian_data - Simulated gaussian epidemiological dataset
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nb2_data - Simulated negative-binomial epidemiological dataset
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poisson_data - Simulated poisson epidemiological dataset
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spatial_replicate - Simulated epidemiological data with independent spatial replicates
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spatial_year - Simulated epidemiological data with independent spatial fields by year
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st_poisson - Simulated spatial poisson epidemiological dataset
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define_exposures() - Define DLNM exposure templates
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check_identifiability() - Diagnose identifiability and numerical stability of DLNM cross-basis designs
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build_design() - Build an epidemic-level DLNM design matrix
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prepare_response() - Prepare and validate the epidemic-level response for modeling
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fit_epidlnm() - Fit a harmonized DLNM inferential model
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find_bestfit() - Find the best DLNM model structure using grouped validation
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ensemble_bestfit() - Create model and lag-contribution ensembles from best-fit DLNM models
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predict_outcomes() - Predict outcomes from fitted EpiExposure DLNM models
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compare_exposures() - Compare chronological exposure profiles
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compare_predictions() - Compare predicted outcomes between exposure scenarios
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simulate_exposures() - Simulate chronological exposure profiles
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simulate_ranges() - Generate exposure-value scenarios across DLNM lag periods
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simulate_scenarios() - Simulate epidemiological exposure-profile scenarios
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simulate_losses() - Simulate yield and economic losses
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define_periods() - Define epidemiological lag periods
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summarise_effects() - Summarise DLNM exposure-lag effects on link and response scales
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reduce_effects() - Reduce a fitted DLNM to a one-dimensional association
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compare_periods() - Compare period-specific DLNM effects
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compute_eci() - Compute Exposure Cumulative Impact
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compute_ecilag() - Compute lag-specific decomposition of Exposure Cumulative Impact (ECI)
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epi_sensitivity() - Compute sensitivity of exposure-response curves
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plot_effects() - Plot lag-specific or period-specific effects
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plot_eci() - Plot ECI and lag-specific contribution results
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plot_scenarios() - Plot predictions across epidemiological scenarios
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plot_losses() - Plot simulated yield and economic losses
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plot_performance() - Plot out-of-fold model performance